Naemanson,
    The Gray's Harbor Historical Seaport Authority (The Lady's owner) was well aware of what Disney's people did to her. I thinbk they even helped design the changes. Part of the deal for renting here was that Disney would put here back the way they found here when they were done.
When I last saw the Lady a month or so ago she still had here PotC paint job and you could see where the extra gun ports were, but otherwise she looke like the Lady I know.

-Bill