The law does not require a church to hold a Public Entertainment Licence for music staged as part of a service.
The law does require a church to hold a PEL for staging a public concert (free or otherwise), but will not charge the fee.
So a non profit-making session in a public house, is taxed with a fee.
And a profit making concert in a church, will not.
(Except in London, where they charge the fee.)