I'm skeptical. If voting is supposed to be anonymous then how can they know whose votes weren't counted?
Of course every vote counts. Just because you vote, though, that doesn't mean your guy is going to win. I vote Libertarian. My guy never wins. But my vote counts.
Now let's fix the goofy system. How big of an undertaking would it be to have a standardized voting system that was the same in every state?